It seems like this https://github.com/phalcon/cphalcon/issues/1955#issuecomment-33925308 is a Bug in 2.0.3 now. In select.zep Line 77 the parameter option is simply appended to the _optionsValues Array.
If option is an Array with a key set, there should be added an new entry with the given key to _optionsValues instead of appending the whole Array